IL_7NRC_026

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

7NRC|1|LA|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_026 not in the Motif Atlas

Homologous match to IL_8C3A_027

Geometric discrepancy: 0.1412

The information below is about IL_8C3A_027

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7NRC|1|LA|A|755
7NRC|1|LA|U|756
*
7NRC|1|LA|A|775
7NRC|1|LA|U|776
7NRC|1|LA|U|777

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LS

60S ribosomal protein L18-A

Chain Ld

60S ribosomal protein L29