IL_7NRC_042

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_042 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.2053

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7NRC|1|LA|A|1006
7NRC|1|LA|U|1007
7NRC|1|LA|U|1008
7NRC|1|LA|A|1009
*
7NRC|1|LA|U|1041
7NRC|1|LA|U|1042
7NRC|1|LA|C|1043
7NRC|1|LA|U|1044

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LG

60S ribosomal protein L5

Chain LL

60S ribosomal protein L10