IL_7NRC_044

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

7NRC|1|LA|C|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_044 not in the Motif Atlas

Homologous match to IL_8C3A_508

Geometric discrepancy: 0.3069

The information below is about IL_8C3A_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07195.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7NRC|1|LA|U|1014
7NRC|1|LA|U|1015
7NRC|1|LA|C|1016
7NRC|1|LA|C|1017
7NRC|1|LA|G|1018
*
7NRC|1|LA|U|1034
7NRC|1|LA|G|1035
7NRC|1|LA|A|1036

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LL

60S ribosomal protein L10

Chain LM

60S ribosomal protein L11-B

Chain Sm

Transfer RNA; tRNA