IL_7NRC_046

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

7NRC|1|LA|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_046 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.0477

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7NRC|1|LA|U|1074
7NRC|1|LA|A|1075
7NRC|1|LA|C|1076
*
7NRC|1|LA|G|1083
7NRC|1|LA|A|1084

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LG

60S ribosomal protein L5

Chain LV

60S ribosomal protein L21-A

Chain Ld

60S ribosomal protein L29