IL_7NRC_047

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_047 not in the Motif Atlas

Homologous match to IL_8C3A_049

Geometric discrepancy: 0.0818

The information below is about IL_8C3A_049

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7NRC|1|LA|A|1120
7NRC|1|LA|U|1121
7NRC|1|LA|U|1122
*
7NRC|1|LA|A|1136
7NRC|1|LA|C|1137
7NRC|1|LA|U|1138

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LB

5S ribosomal RNA; 5S rRNA

Chain LI

60S ribosomal protein L7-A

Chain Ld

60S ribosomal protein L29