3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAGUG*CUC
Length
8 nucleotides
Bulged bases
7NRC|1|LA|A|1263
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_056 not in the Motif Atlas
Homologous match to IL_8C3A_059
Geometric discrepancy: 0.3159
The information below is about IL_8C3A_059
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

7NRC|1|LA|G|1262
7NRC|1|LA|A|1263
7NRC|1|LA|G|1264
7NRC|1|LA|U|1265
7NRC|1|LA|G|1266
*
7NRC|1|LA|C|1275
7NRC|1|LA|U|1276
7NRC|1|LA|C|1277

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

No other chains within 10Å

Coloring options:


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