IL_7NRC_056
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAGUG*CUC
- Length
- 8 nucleotides
- Bulged bases
- 7NRC|1|LA|A|1263
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_056 not in the Motif Atlas
- Homologous match to IL_8C3A_059
- Geometric discrepancy: 0.3159
- The information below is about IL_8C3A_059
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7NRC|1|LA|G|1262
7NRC|1|LA|A|1263
7NRC|1|LA|G|1264
7NRC|1|LA|U|1265
7NRC|1|LA|G|1266
*
7NRC|1|LA|C|1275
7NRC|1|LA|U|1276
7NRC|1|LA|C|1277
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
No other chains within 10ÅColoring options: