IL_7NRC_078

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7NRC|1|LA|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_078 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.1247

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7NRC|1|LA|C|1918
7NRC|1|LA|G|1919
7NRC|1|LA|U|1920
7NRC|1|LA|A|1921
7NRC|1|LA|A|1922
7NRC|1|LA|C|1923
*
7NRC|1|LA|G|1928
7NRC|1|LA|G|1929
7NRC|1|LA|A|1930
7NRC|1|LA|U|1931
7NRC|1|LA|A|1932
7NRC|1|LA|A|1933
7NRC|1|LA|G|1934

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Lp

60S ribosomal protein L41-A

Chain Lr

60S ribosomal protein L43-A

Chain S2

Small subunit ribosomal RNA; SSU rRNA