IL_7NRC_087

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

7NRC|1|LA|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NRC|1|LA|G|2206
7NRC|1|LA|A|2207
7NRC|1|LA|A|2208
7NRC|1|LA|U|2209
7NRC|1|LA|G|2210
*
7NRC|1|LA|C|2235
7NRC|1|LA|G|2236
7NRC|1|LA|C|2237

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Ls

eiF5A

Chain Lt

L1 60S ribosomal protein

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SQ

40S ribosomal protein S1-A