IL_7NRC_107

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_107 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.154

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7NRC|1|LA|U|2835
7NRC|1|LA|C|2836
7NRC|1|LA|A|2837
7NRC|1|LA|A|2838
7NRC|1|LA|G|2839
*
7NRC|1|LA|C|2849
7NRC|1|LA|G|2850
7NRC|1|LA|A|2851
7NRC|1|LA|C|2852
7NRC|1|LA|A|2853

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LL

60S ribosomal protein L10

Chain Lo

60S ribosomal protein L40-A

Chain Sm

Transfer RNA; tRNA