IL_7NRC_108

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_108 not in the Motif Atlas

Homologous match to IL_5TBW_107

Geometric discrepancy: 0.1322

The information below is about IL_5TBW_107

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7NRC|1|LA|C|2876
7NRC|1|LA|G|2877
*
7NRC|1|LA|U|2949
7NRC|1|LA|G|2950
7NRC|1|LA|G|2951

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Sm

Transfer RNA; tRNA