IL_7NRC_112

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

7NRC|1|LA|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_112 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.1494

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7NRC|1|LA|U|2891
7NRC|1|LA|A|2892
*
7NRC|1|LA|U|2909
7NRC|1|LA|A|2910
7NRC|1|LA|A|2911
7NRC|1|LA|G|2912

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LK

60S ribosomal protein L9-A

Chain LQ

60S ribosomal protein L16-A

Chain Lo

60S ribosomal protein L40-A