IL_7NRC_128

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

7NRC|1|LA|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_128 not in the Motif Atlas

Homologous match to IL_8C3A_133

Geometric discrepancy: 0.1303

The information below is about IL_8C3A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

7NRC|1|LA|C|3225
7NRC|1|LA|A|3226
7NRC|1|LA|A|3227
7NRC|1|LA|C|3228
7NRC|1|LA|G|3229
*
7NRC|1|LA|U|3258
7NRC|1|LA|U|3259
7NRC|1|LA|G|3260

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LH

60S ribosomal protein L6-B

Chain LO

60S ribosomal protein L14-A

Chain Lh

60S ribosomal protein L33-A