3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUA*UC
Length
5 nucleotides
Bulged bases
7NRC|1|LA|U|3319
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_132 not in the Motif Atlas
Geometric match to IL_5TBW_130
Geometric discrepancy: 0.2632
The information below is about IL_5TBW_130
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

7NRC|1|LA|G|3318
7NRC|1|LA|U|3319
7NRC|1|LA|A|3320
*
7NRC|1|LA|U|3387
7NRC|1|LA|C|3388

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LE
60S ribosomal protein L3
Chain Lf
60S ribosomal protein L31-A

Coloring options:


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