3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GU*AUC
Length
5 nucleotides
Bulged bases
7NRC|1|LC|U|90
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_148 not in the Motif Atlas
Homologous match to IL_5TBW_146
Geometric discrepancy: 0.1601
The information below is about IL_5TBW_146
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

7NRC|1|LC|G|68
7NRC|1|LC|U|69
*
7NRC|1|LC|A|89
7NRC|1|LC|U|90
7NRC|1|LC|C|91

Current chains

Chain LC
5.8S rRNA (158-MER)

Nearby chains

Chain LA
Large subunit ribosomal RNA; LSU rRNA
Chain La
60S ribosomal protein L26-A
Chain Lj
60S ribosomal protein L35-A
Chain Ln
60S ribosomal protein L39

Coloring options:


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