IL_7NRC_158
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUAUUU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_158 not in the Motif Atlas
- Homologous match to IL_4V88_393
- Geometric discrepancy: 0.1279
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
7NRC|1|S2|U|117
7NRC|1|S2|U|118
7NRC|1|S2|A|119
7NRC|1|S2|U|120
7NRC|1|S2|U|121
7NRC|1|S2|U|122
*
7NRC|1|S2|A|295
7NRC|1|S2|U|296
7NRC|1|S2|U|297
7NRC|1|S2|C|298
7NRC|1|S2|A|299
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain SV
- 40S ribosomal protein S8-A
Coloring options: