IL_7NRC_162

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

7NRC|1|S2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_162 not in the Motif Atlas

Homologous match to IL_4V88_397

Geometric discrepancy: 0.3297

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7NRC|1|S2|G|204
7NRC|1|S2|U|205
7NRC|1|S2|A|206
*
7NRC|1|S2|U|259
7NRC|1|S2|U|260
7NRC|1|S2|U|261
7NRC|1|S2|U|262
7NRC|1|S2|C|263

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain ST

40S ribosomal protein S6-A

Chain SV

40S ribosomal protein S8-A