IL_7NRC_177

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UACA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_177 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3439

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7NRC|1|S2|U|517
7NRC|1|S2|A|518
7NRC|1|S2|C|519
7NRC|1|S2|A|520
*
7NRC|1|S2|U|532
7NRC|1|S2|U|533
7NRC|1|S2|A|534
7NRC|1|S2|A|535

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sd

40S ribosomal protein S24-A