IL_7NRC_178

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_178 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2023

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

7NRC|1|S2|A|550
7NRC|1|S2|G|551
7NRC|1|S2|G|552
7NRC|1|S2|G|553
7NRC|1|S2|C|554
7NRC|1|S2|A|555
7NRC|1|S2|A|556
7NRC|1|S2|G|557
*
7NRC|1|S2|C|587
7NRC|1|S2|U|588

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SR

40S ribosomal protein S2

Chain SW

40S ribosomal protein S9-A

Chain Sg

40S ribosomal protein S30-A