IL_7NRC_179

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7NRC|1|S2|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_179 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.4595

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7NRC|1|S2|G|557
7NRC|1|S2|U|558
7NRC|1|S2|C|559
*
7NRC|1|S2|G|586
7NRC|1|S2|C|587

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SA

40S ribosomal protein S3

Chain Sg

40S ribosomal protein S30-A