3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UUU*AUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_187 not in the Motif Atlas
Homologous match to IL_4V88_424
Geometric discrepancy: 0.1918
The information below is about IL_4V88_424
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

7NRC|1|S2|U|748
7NRC|1|S2|U|749
7NRC|1|S2|U|750
*
7NRC|1|S2|A|799
7NRC|1|S2|U|800
7NRC|1|S2|G|801

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SS
40S ribosomal protein S4-A
Chain SU
40S ribosomal protein S7-A
Chain SX
40S ribosomal protein S11-A
Chain Sb
40S ribosomal protein S22-A

Coloring options:


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