IL_7NRC_196
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 7NRC|1|S2|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_196 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.2563
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
7NRC|1|S2|U|893
7NRC|1|S2|U|894
7NRC|1|S2|G|895
7NRC|1|S2|U|896
7NRC|1|S2|C|897
7NRC|1|S2|A|898
7NRC|1|S2|G|899
*
7NRC|1|S2|C|910
7NRC|1|S2|U|911
7NRC|1|S2|U|912
7NRC|1|S2|G|913
7NRC|1|S2|G|914
7NRC|1|S2|A|915
7NRC|1|S2|U|916
7NRC|1|S2|U|917
7NRC|1|S2|U|918
7NRC|1|S2|A|919
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain SQ
- 40S ribosomal protein S1-A
- Chain SZ
- 40S ribosomal protein S14-B
Coloring options: