3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GG*CAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_208 not in the Motif Atlas
Homologous match to IL_4V88_445
Geometric discrepancy: 0.328
The information below is about IL_4V88_445
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_18604.1
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
46

Unit IDs

7NRC|1|S2|G|1178
7NRC|1|S2|G|1179
*
7NRC|1|S2|C|1459
7NRC|1|S2|A|1460
7NRC|1|S2|C|1461

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SE
40S ribosomal protein S15
Chain SH
40S ribosomal protein S18-A
Chain Sm
Transfer RNA; tRNA
Chain Sn
Transfer RNA; tRNA

Coloring options:


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