IL_7NRC_238
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGGAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_238 not in the Motif Atlas
- Geometric match to IL_4WFL_001
- Geometric discrepancy: 0.2014
- The information below is about IL_4WFL_001
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
7NRC|1|S2|A|1678
7NRC|1|S2|G|1679
7NRC|1|S2|G|1680
7NRC|1|S2|A|1681
7NRC|1|S2|U|1682
*
7NRC|1|S2|A|1719
7NRC|1|S2|G|1720
7NRC|1|S2|A|1721
7NRC|1|S2|A|1722
7NRC|1|S2|U|1723
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain LY
- 60S ribosomal protein L24-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain SV
- 40S ribosomal protein S8-A
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