IL_7NRC_245
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_245 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.0875
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
7NRC|1|LA|G|1898
7NRC|1|LA|G|1899
7NRC|1|LA|A|1900
7NRC|1|LA|A|1901
7NRC|1|LA|G|1902
7NRC|1|LA|U|1903
7NRC|1|LA|C|1904
7NRC|1|LA|G|1905
7NRC|1|LA|G|1906
*
7NRC|1|LA|C|2333
7NRC|1|LA|U|2334
7NRC|1|LA|G|2335
7NRC|1|LA|U|2336
7NRC|1|LA|C|2337
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LX
- 60S ribosomal protein L23-A
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