3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGAAGUCGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_245 not in the Motif Atlas
Homologous match to IL_8C3A_484
Geometric discrepancy: 0.0875
The information below is about IL_8C3A_484
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.2
Basepair signature
cWW-cWW-L-cWW-L-R-L-R-L-L
Number of instances in this motif group
3

Unit IDs

7NRC|1|LA|G|1898
7NRC|1|LA|G|1899
7NRC|1|LA|A|1900
7NRC|1|LA|A|1901
7NRC|1|LA|G|1902
7NRC|1|LA|U|1903
7NRC|1|LA|C|1904
7NRC|1|LA|G|1905
7NRC|1|LA|G|1906
*
7NRC|1|LA|C|2333
7NRC|1|LA|U|2334
7NRC|1|LA|G|2335
7NRC|1|LA|U|2336
7NRC|1|LA|C|2337

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LE
60S ribosomal protein L3
Chain LX
60S ribosomal protein L23-A

Coloring options:


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