IL_7NRC_255

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_255 not in the Motif Atlas

Geometric match to IL_3R1E_001

Geometric discrepancy: 0.3492

The information below is about IL_3R1E_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

7NRC|1|S2|U|1688
7NRC|1|S2|A|1689
7NRC|1|S2|G|1690
*
7NRC|1|S2|C|1711
7NRC|1|S2|A|1712
7NRC|1|S2|G|1713

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain ST

40S ribosomal protein S6-A