IL_7NSI_008

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GCAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSI_008 not in the Motif Atlas

Geometric match to IL_1NTA_003

Geometric discrepancy: 0.2726

The information below is about IL_1NTA_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

7NSI|1|AA|G|116
7NSI|1|AA|C|117
7NSI|1|AA|A|118
7NSI|1|AA|C|119
*
7NSI|1|AA|G|133
7NSI|1|AA|C|134

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AO

28S ribosomal protein S15, mitochondrial

Chain AQ

uS17m

Chain Aj

Mitochondrial ribosomal protein S34

Chain An

Aurora kinase A interacting protein 1