IL_7NSI_028

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCU*AG

Length

5 nucleotides

Bulged bases

7NSI|1|AA|C|609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSI_028 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.1993

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

7NSI|1|AA|C|608
7NSI|1|AA|C|609
7NSI|1|AA|U|610
*
7NSI|1|AA|A|693
7NSI|1|AA|G|694

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

28S ribosomal protein S5, mitochondrial isoform X2

Chain AN

28S ribosomal protein S14, mitochondrial

Chain Ai

Mitochondrial ribosomal protein S33