IL_7NSI_034
3D structure
- PDB id
- 7NSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CC*GAACAAUAG
- Length
- 11 nucleotides
- Bulged bases
- 7NSI|1|AA|A|644, 7NSI|1|AA|A|647
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NSI_034 not in the Motif Atlas
- Geometric match to IL_1U9S_003
- Geometric discrepancy: 0.2196
- The information below is about IL_1U9S_003
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_71421.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7NSI|1|AA|C|633
7NSI|1|AA|C|634
*
7NSI|1|AA|G|643
7NSI|1|AA|A|644
7NSI|1|AA|A|645
7NSI|1|AA|C|646
7NSI|1|AA|A|647
7NSI|1|AA|A|648
7NSI|1|AA|U|649
7NSI|1|AA|A|650
7NSI|1|AA|G|651
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AB
- 28S ribosomal protein S2, mitochondrial
- Chain AE
- 28S ribosomal protein S5, mitochondrial isoform X2
- Chain AI
- 28S ribosomal protein S9, mitochondrial
- Chain AU
- 28S ribosomal protein S21, mitochondrial
- Chain Ab
- Mitochondrial ribosomal protein S23
- Chain Am
- Coiled-coil-helix-coiled-coil-helix domain containing 1
Coloring options: