IL_7NSO_136

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSO_136 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0904

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7NSO|1|a|U|409
7NSO|1|a|G|410
7NSO|1|a|A|411
7NSO|1|a|A|412
7NSO|1|a|G|413
7NSO|1|a|A|414
7NSO|1|a|A|415
7NSO|1|a|G|416
*
7NSO|1|a|U|427
7NSO|1|a|G|428
7NSO|1|a|U|429
7NSO|1|a|A|430
7NSO|1|a|A|431
7NSO|1|a|A|432
7NSO|1|a|G|433

Current chains

Chain a

16S rRNA (1540-MER)

Nearby chains

Chain d

30S ribosomal protein S4