IL_7NSP_082

3D structure

PDB id

7NSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGAGC*GUUUGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSP_082 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3254

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7NSP|1|A|U|2098
7NSP|1|A|U|2099
7NSP|1|A|G|2100
7NSP|1|A|A|2101
7NSP|1|A|G|2102
7NSP|1|A|C|2103
*
7NSP|1|A|G|2186
7NSP|1|A|U|2187
7NSP|1|A|U|2188
7NSP|1|A|U|2189
7NSP|1|A|G|2190
7NSP|1|A|A|2191

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9