IL_7NSP_188

3D structure

PDB id

7NSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSP_188 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.117

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7NSP|1|A|G|1666
7NSP|1|A|G|1667
7NSP|1|A|A|1668
7NSP|1|A|A|1669
7NSP|1|A|C|1670
7NSP|1|A|U|1671
7NSP|1|A|A|1672
7NSP|1|A|G|1673
7NSP|1|A|G|1674
*
7NSP|1|A|C|1990
7NSP|1|A|U|1991
7NSP|1|A|G|1992
7NSP|1|A|U|1993
7NSP|1|A|C|1994

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14