IL_7NSQ_055

3D structure

PDB id

7NSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGUAG*UGAGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSQ_055 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3849

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7NSQ|1|A|G|1473
7NSQ|1|A|U|1474
7NSQ|1|A|G|1475
7NSQ|1|A|U|1476
7NSQ|1|A|A|1477
7NSQ|1|A|G|1478
*
7NSQ|1|A|U|1513
7NSQ|1|A|G|1514
7NSQ|1|A|A|1515
7NSQ|1|A|G|1516
7NSQ|1|A|G|1517
7NSQ|1|A|C|1518

Current chains

Chain A

23S rRNA

Nearby chains