IL_7NSQ_133

3D structure

PDB id

7NSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSQ_133 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0962

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7NSQ|1|a|U|409
7NSQ|1|a|G|410
7NSQ|1|a|A|411
7NSQ|1|a|A|412
7NSQ|1|a|G|413
7NSQ|1|a|A|414
7NSQ|1|a|A|415
7NSQ|1|a|G|416
*
7NSQ|1|a|U|427
7NSQ|1|a|G|428
7NSQ|1|a|U|429
7NSQ|1|a|A|430
7NSQ|1|a|A|431
7NSQ|1|a|A|432
7NSQ|1|a|G|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4