IL_7NWH_032

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

7NWH|1|5|C|738, 7NWH|1|5|C|738|||A, 7NWH|1|5|C|924, 7NWH|1|5|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_032 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.3384

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7NWH|1|5|C|737
7NWH|1|5|C|738
7NWH|1|5|C|738|||A
7NWH|1|5|G|739
*
7NWH|1|5|C|923
7NWH|1|5|C|924
7NWH|1|5|C|925
7NWH|1|5|G|926

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain M

Ribosomal protein L14