IL_7NWH_035

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_035 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.2522

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7NWH|1|5|G|1075
7NWH|1|5|C|1076
*
7NWH|1|5|G|1234
7NWH|1|5|G|1235
7NWH|1|5|C|1236

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain C

uL4

Chain E

60S ribosomal protein L6

Chain F

uL30

Chain b

eL29