IL_7NWH_040

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUG*CGGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_040 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3419

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

7NWH|1|5|C|1099
7NWH|1|5|U|1100
7NWH|1|5|G|1168
*
7NWH|1|5|C|1193
7NWH|1|5|G|1194
7NWH|1|5|G|1195
7NWH|1|5|G|1196

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains