IL_7NWH_069

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

7NWH|1|5|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_069 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.3643

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

7NWH|1|5|U|1918
7NWH|1|5|G|1919
7NWH|1|5|C|1920
*
7NWH|1|5|G|2063
7NWH|1|5|G|2064

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain F

uL30

Chain O

60S RIBOSOMAL PROTEIN UL13

Chain S

60S ribosomal protein L18a

Chain f

eL33