IL_7NWH_080

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

7NWH|1|5|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_080 not in the Motif Atlas

Geometric match to IL_7RQB_033

Geometric discrepancy: 0.2849

The information below is about IL_7RQB_033

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

7NWH|1|5|U|2312
7NWH|1|5|A|2313
7NWH|1|5|G|2314
*
7NWH|1|5|C|2325
7NWH|1|5|G|2326

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain e

Ribosomal protein L32

Chain r

eL28