IL_7NWH_104

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_104 not in the Motif Atlas

Homologous match to IL_8C3A_091

Geometric discrepancy: 0.3037

The information below is about IL_8C3A_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7NWH|1|5|C|3708
7NWH|1|5|U|3709
7NWH|1|5|G|3710
*
7NWH|1|5|C|3741
7NWH|1|5|G|3742

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

60S ribosomal protein L8