IL_7NWH_111

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

7NWH|1|5|U|3914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_111 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.1281

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7NWH|1|5|G|3913
7NWH|1|5|U|3914
7NWH|1|5|U|3915
*
7NWH|1|5|A|4388
7NWH|1|5|C|4389

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain C

uL4

Chain a

60S ribosomal protein L27a