IL_7NWH_152

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

7NWH|1|5|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_152 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.242

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

7NWH|1|5|G|5012
7NWH|1|5|C|5013
7NWH|1|5|A|5014
*
7NWH|1|5|U|5035
7NWH|1|5|C|5036

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L24-like protein