IL_7NWH_164

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

7NWH|1|9|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_164 not in the Motif Atlas

Geometric match to IL_6YML_002

Geometric discrepancy: 0.3903

The information below is about IL_6YML_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7NWH|1|9|C|37
7NWH|1|9|A|38
7NWH|1|9|A|39
7NWH|1|9|A|40
*
7NWH|1|9|U|514
7NWH|1|9|G|515
7NWH|1|9|A|516
7NWH|1|9|C|517
7NWH|1|9|G|518

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain JJ

40S ribosomal protein S9