IL_7NWH_175

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_175 not in the Motif Atlas

Geometric match to IL_4KQ0_004

Geometric discrepancy: 0.1758

The information below is about IL_4KQ0_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

7NWH|1|9|U|152
7NWH|1|9|G|153
7NWH|1|9|U|154
*
7NWH|1|9|A|164
7NWH|1|9|G|165
7NWH|1|9|A|166

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain YY

40S ribosomal protein S24