IL_7NWH_176

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_176 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3232

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7NWH|1|9|C|188
7NWH|1|9|U|189
7NWH|1|9|G|190
7NWH|1|9|A|191
7NWH|1|9|C|192
*
7NWH|1|9|G|207
7NWH|1|9|G|208
7NWH|1|9|A|209
7NWH|1|9|U|210
7NWH|1|9|G|211

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain II

40S ribosomal protein S8