IL_7NWH_182

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

7NWH|1|9|U|367, 7NWH|1|9|U|368, 7NWH|1|9|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_182 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3964

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7NWH|1|9|U|366
7NWH|1|9|U|367
7NWH|1|9|U|368
7NWH|1|9|C|369
7NWH|1|9|G|370
7NWH|1|9|A|371
*
7NWH|1|9|U|393
7NWH|1|9|G|394

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain II

40S ribosomal protein S8

Chain LL

40S ribosomal protein S11