IL_7NWH_187

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_187 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.1793

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

7NWH|1|9|C|491
7NWH|1|9|C|492
7NWH|1|9|A|493
7NWH|1|9|C|494
7NWH|1|9|U|495
*
7NWH|1|9|A|508
7NWH|1|9|G|509

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24