IL_7NWH_193
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 7NWH|1|9|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWH_193 not in the Motif Atlas
- Geometric match to IL_8C3A_504
- Geometric discrepancy: 0.335
- The information below is about IL_8C3A_504
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_26569.1
- Basepair signature
- cWW-R-cHW-L
- Number of instances in this motif group
- 1
Unit IDs
7NWH|1|9|A|599
7NWH|1|9|G|600
7NWH|1|9|G|601
7NWH|1|9|G|602
7NWH|1|9|C|603
7NWH|1|9|A|604
7NWH|1|9|A|605
7NWH|1|9|G|606
7NWH|1|9|U|607
7NWH|1|9|C|608
*
7NWH|1|9|G|635
7NWH|1|9|C|636
7NWH|1|9|U|637
Current chains
- Chain 9
- 18S Ribosomal RNA
Nearby chains
- Chain CC
- 40S ribosomal protein S2
- Chain DD
- 40S ribosomal protein S3
- Chain JJ
- 40S ribosomal protein S9
- Chain ee
- 40S ribosomal protein S30
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