IL_7NWH_208

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_208 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.1603

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

7NWH|1|9|A|922
7NWH|1|9|G|923
*
7NWH|1|9|C|1019
7NWH|1|9|A|1020
7NWH|1|9|U|1021
7NWH|1|9|U|1022

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain NN

ribosomal protein uS15

Chain WW

Ribosomal protein S15a

Chain bb

40S ribosomal protein S27