IL_7NWH_222

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGGA*UUG

Length

7 nucleotides

Bulged bases

7NWH|1|9|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_222 not in the Motif Atlas

Geometric match to IL_5MWI_008

Geometric discrepancy: 0.2956

The information below is about IL_5MWI_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

7NWH|1|9|C|1205
7NWH|1|9|G|1206
7NWH|1|9|G|1207
7NWH|1|9|A|1208
*
7NWH|1|9|U|1691
7NWH|1|9|U|1692
7NWH|1|9|G|1693

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain aa

40S ribosomal protein S26

Chain hh

mRNA