IL_7NWH_231
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 7NWH|1|9|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWH_231 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.3545
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
7NWH|1|9|U|1329
7NWH|1|9|G|1330
7NWH|1|9|C|1331
7NWH|1|9|A|1332
7NWH|1|9|U|1333
*
7NWH|1|9|A|1498
7NWH|1|9|U|1499
7NWH|1|9|G|1500
Current chains
- Chain 9
- 18S Ribosomal RNA
Nearby chains
- Chain DD
- 40S ribosomal protein S3
- Chain KK
- 40S ribosomal protein S10
- Chain UU
- 40S ribosomal protein S20
- Chain dd
- S29
- Chain hh
- mRNA
- Chain ii
- Eukaryotic peptide chain release factor subunit 1
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